Category: Sequence - Multiple Alignment

Programs:

• boxshade - Multiple alignment display
• clu2ig - Translate multiply aligned sequences in clustal format to Intelligenetics format
• clustalw - Multiple sequence alignment
• clustalx - Multiple sequence alignment and editing
• dialign-tx - segment-based multiple alignment
• gde - Genetic Data Environment
• Jalview - Multiple alignment viewer
• mrtrans - Align DNA sequences to a protein multiple alignment
• pima - Pattern-induced multiple sequence alignment
• reform - print a multiple alignment using plain text
• tcoffee - Multiple sequence alignment